[root]
build
[everything is built here]doc
[documentation]example_data
[some example data files]libraries
[3rd party library archives]pwiz
[main source tree -- all Apache licensed] pwiz_aux
[non-Apache licensed contributed code] pwiz_tools
[source code for tools]
pwiz
of the same name.
math:
Mathematics classes (linear algebra, statistics,
special mathematical functions)
misc:
Miscellaneous standalone utility classes (Base64, SHA-1,
2D drawing, unit testing)
minimxml:
XML parsing and writing
proteome:
Chemical formula, peptide, and isotope calculations.
vendor_api:
Vendor-specific API wrappers (Windows only)
msdata:
Mass spec file format abstraction layer.
misc:
Library containing classes for handling FT transient data,
complex frequency data, MS1 peak data.
vendor_readers:
Vendor-specific Reader implementations
chromatogram_processing:
Chromatogram analysis
frequency:
Library of routines for frequency-domain peak detection.
passive:
Event-driven analysis modules
peakdetect:
General interface for peak detection
peptideid:
Modules handling peptide id info abstraction and parsing
spectrum_processing:
Spectrum analysis
commandline:
Command-line toolsSeeMS:
Graphic data visualization program (Windows only)