-mdat -hdat -d 3 -sn 1 -p 12 -corr 0.9 -chMax 5 -chMin 1 -res 50000 FTICR -a FastFewestPeptides -win 5.0 -snWin 250 1 -cdm Q -i -sl 3 #Files to analyze # <.hk output file name> # example: # 080720_S288C_4ug_1.cms1 080720_S288C_4ug_1_081023.hk