The raw data wiff files for the "mitochondrial matrix high throughput" quantitation experiments are the same files as uploaded for the "5600_acetylpeptide curve" (see in that folder).

replicate acquisitions:

are all "mitochondrial lysate from mouse liver, 0.3 ug injected on column" 

110914_0039_A9_rep1_
110914_0040_A10_rep1_
110914_0041_A11_rep1_
110914_0042_A12_rep1_
110914_0044_A13_rep1_
110914_0045_A14_rep1_
110914_0046_A15_rep1_
110914_0047_A16_rep1_
110914_0038_A0Mito_rep1_
110914_0050_A9_rep2_
110914_0051_A10_rep2_
110914_0049_A0Mito_rep2_
110914_0053_A12_rep2_
110914_0055_A13_rep2_
110914_0052_A11_rep2_
110914_0056_A14_rep2_
110914_0057_A15_rep2_
110914_0058_A16_rep2_
110914_0060_A0Mito_rep3_
110914_0061_A9_rep3_
110914_0062_A10_rep3_
110914_0063_A11_rep3_
110914_0064_A12_rep3_
110914_0066_A13_rep3_
110914_0067_A14_rep3_
110914_0068_A15_rep3_
110914_0069_A16_rep3_

Samples contain different levels os acetyllysine peptide spike levels ranging from 4 attomoles to 25 femtomoles, however the mitochondrial lysate matrix in all samples is identical with 0.3 ug loaded on column.