QS7 - Control

DTASelect v1.9.01
/net/maccoss/vol1/home/hoopmann/QS7
/net/maccoss/vol2/software/dbase/SGD/SGD-orf-040204-rand.fasta
EE-normalized ? in SQT format.
-1 0.28 -2 0.28 -3 0.28 -d 0.12 -y 1 -i 0.2 -p 2 -o -Smn 7 -e rand_
Jump to the summary table.

sequest.params modifications:

*	X	0.0
#	X	0.0
@	X	0.0
Static	C	57.0

true	Use criteria
0.28	Minimum +1 XCorr
0.28	Minimum +2 XCorr
0.28	Minimum +3 XCorr
0.12	Minimum DeltCN
1	Minimum charge state
3	Maximum charge state
0.2	Minimum ion proportion
1000	Maximum Sp rank
-1.0	Minimum Sp score
Include	Modified peptide inclusion
Half	Tryptic status requirement
true	Multiple, ambiguous IDs allowed
Ignore	Peptide validation handling
	Sequences must include all of
	Sequences must include pattern
	Sequences can contain none of
	Preceding residue must be one of
	C terminal residue must be one of
7	Minimum sequence length
100	Maximum sequence length
0	Sequence completeness required
XCorr	Purge duplicate peptides by protein
false	Include only loci with unique peptide
true	Remove subset proteins
Ignore	Locus validation handling
rand_	Exclude protein names matching
0	Minimum modified peptides per locus
10	Minimum redundancy for low coverage loci
2	Minimum peptides per locus

Locus Key:

Validation Status

Locus

Sequence Count

Spectrum Count

Sequence Coverage

Length

MolWt

Descriptive Name

Similarity Key:

Locus

# of identical peptides

# of differing peptides

YLL024C

37.3%

639

69470

5.1

SSA2 SGDID:S0003947, Chr XII from 97484-95565, reverse complement, Verified ORF

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	032305-alex-pull-down-control.06486.06486.2	0.6432	0.2342	1457.35	1458.568	1	1244.2	83.2%	2	R.TTPSFVGFTDTER.L	2
*	032305-alex-pull-down-control.01776.01776.2	0.4831	0.3426	1591.69	1592.767	1	1221.5	73.0%	1	K.NQAAMNPANTVFDAK.R	2
	032305-alex-pull-down-control.07489.07489.2	0.4198	0.2987	1728.27	1730.014	1	664.3	77.7%	1	K.LIDVDGKPQIQVEFK.G	22
	032305-alex-pull-down-control.11455.11455.2	0.4542	0.2573	1551.15	1551.798	1	1263.1	74.2%	2	K.NFTPEQISSMVLGK.M	22
	032305-alex-pull-down-control.08313.08313.2	0.4341	0.3194	1895.63	1896.067	1	893.2	67.2%	1	K.VNDAVVTVPAYFNDSQR.Q	222
	032305-alex-pull-down-control.08329.08329.3	0.5482	0.3236	1896.23	1896.067	1	918.3	49.6%	1	K.VNDAVVTVPAYFNDSQR.Q	333
	032305-alex-pull-down-control.08271.08271.2	0.5221	0.2019	2068.05	2069.305	1	1275.1	74.2%	1	D.LGGGTFDVSLLSIEDGIFEV.K	222
	032305-alex-pull-down-control.08815.08815.2	0.3453	0.3746	1659.15	1660.908	1	1675.4	88.1%	2	R.IINEPTAAAIAYGLDK.K	222
	032305-alex-pull-down-control.01960.01960.3	0.3881	0.2512	1274.78	1275.493	2	459.6	65.4%	1	R.LVNHFIQEFK.R	33
	032305-alex-pull-down-control.15521.15521.2	0.5509	0.4321	2577.25	2578.792	1	2113.2	57.1%	1	R.SINPDEAVAYGAAVQAAILTGDESSK.T	22
	032305-alex-pull-down-control.15640.15640.3	0.4221	0.2234	2578.29	2578.792	1	1424.6	52.1%	2	R.SINPDEAVAYGAAVQAAILTGDESSK.T	33
	032305-alex-pull-down-control.20298.20298.2	0.4092	0.3676	2556.19	2557.018	1	999.9	41.5%	2	K.TQDLLLLDVAPLSLGIETAGGVMTK.L	22
	032305-alex-pull-down-control.12666.12666.3	0.4679	0.2839	2712.38	2714.992	1	1032.3	39.5%	1	K.KSEVFSTYADNQPGVLIQVFEGER.A	3
	032305-alex-pull-down-control.14134.14134.3	0.3110	0.3087	2586.55	2586.817	1	2537.9	48.2%	1	K.SEVFSTYADNQPGVLIQVFEGER.A	3
	032305-alex-pull-down-control.07295.07295.2	0.4521	0.2157	1185.89	1184.381	9	890.1	64.1%	5	K.FELSGIPPAPR.G	222
*	032305-alex-pull-down-control.02442.02442.3	0.4787	0.299	2133.29	2134.305	1	1231.3	43.7%	2	K.NTISEAGDKLEQADKDAVTK.K	3
*	032305-alex-pull-down-control.01701.01701.2	0.4353	0.1567	1358.49	1359.581	4	786.9	64.9%	1	K.ELQEVANPIMSK.L	2

Similarities: YAL005C(13:6)
YJL034W(1:18)
YBL075C(4:15)

YGL030W

34.3%

105

11415

9.8

RPL30 SGDID:S0002998, Chr VII from 439094-439096,439327-439641, Verified ORF

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	032305-alex-pull-down-control.07214.07214.2	0.5105	0.3966	1816.23	1817.996	1	2152.5	87.4%	1	K.VYYFQGGNNELGTAVGK.L	2
*	032305-alex-pull-down-control.20511.20511.2	0.6844	0.5111	1874.01	1874.139	1	705	55.9%	1	R.VGVVSILEAGDSDILTTLA.-	2

YDR382W

28.0%

110

11050

4.1

RPP2B SGDID:S0002790, Chr IV from 1239480-1239812, Verified ORF

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	032305-alex-pull-down-control.07143.07143.2	0.6764	0.447	1640.14	1638.905	1	1231.1	76.5%	1	Y.LLLVQGGNAAPSAADIK.A	2
*	032305-alex-pull-down-control.07762.07762.2	0.5122	0.2012	1202.57	1203.378	2	1293.3	65.1%	1	R.INELLSSLEGK.G	2

YGR192C

24.7%

332

35747

7.0

TDH3 SGDID:S0003424, Chr VII from 883813-882815, reverse complement, Verified ORF

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	032305-alex-pull-down-control.16006.16006.3	0.3721	0.2921	3174.38	3173.654	1	1666.2	43.1%	1	R.IALSRPNVEVVALNDPFITNDYAAYMFK.Y	3
*	032305-alex-pull-down-control.08469.08469.2	0.2902	0.4164	1611.34	1610.761	1	892.2	82.1%	1	W.GSSNVDIAIDSTGVFK.E	2
*	032305-alex-pull-down-control.17263.17263.3	0.3353	0.3945	2576.49	2576.924	1	912.4	56.7%	2	K.VINDAFGIEEGLMTTVHSLTATQK.T	3
	032305-alex-pull-down-control.09571.09571.2	0.4714	0.3892	1470.99	1471.734	1	1167.7	81.5%	1	R.VPTVDVSVVDLTVK.L	2

YDR170C

0.8%

2009

226884

4.8

SEC7 SGDID:S0002577, Chr IV from 802216-796187, reverse complement, Verified ORF

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	032305-alex-pull-down-control.20678.20678.2	0.4659	0.3579	1866.21	1867.065	1	1993.0	70.0%	1	R.DFLEGLFNEIANNEIK.L	2
*	032305-alex-pull-down-control.20682.20682.3	0.4549	0.2027	1866.89	1867.065	2	1288.0	45.0%	1	R.DFLEGLFNEIANNEIK.L	3

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