Table of Contents
Welcome
The identification of proteins from peptide MS/MS spectra can now be done with a single command. The pipeline program hermie is designed to take MS/MS spectra and return an HTML file with a summary of all of the proteins identified. Within these pages you will find the complete documentation for running hermie. New users may want to begin by reading the tutorial for getting started. Experienced users can refer to the UNIX-style man page and the section on customization. Check out the troubleshooting page for explanations of error messages as well as instructions on how to restart an interrupted run. Having trouble finding information? Try the index for a list of all topics.