BlibToMS2

Description:  Write an MS2 file that contains all spectra in a library.

Usage: BlibToMS2 [options]  <library>

Input:

• <library> – a spectrum library file, filtered or redundant.

Output:  The spectra are printed to a file named <library>.ms2 in the MS2 format. The scan number is replaced with the library ID number. Two 'D' lines contain the peptide sequence with and without modifications.

Options:

• -f [ --file-name ] <ms2 file>– Use this name for the output MS2 file rather than the default name, <library>.ms2.
• -m [ --mz-precision ] <num>– Write the peak m/z values with this many digits of precision. Default 2.
• -i [ --intenisty-precision ] <num>– Write the peak intensity values with this many digits of precision. Default 1.
• -p [ --parameter-file ] <file> – Specify parameters in a separate file. Command line vales override the file.
• -v [ --verbose ] <silent|error|status|warn> – Set the verbosity level of the output to stderr. The default level is status.
• -h [ --help ] – Print the help message.