ProteoWizard Tools

msconvert general data format conversion tool
msaccess command line access to mass spec data files, including spectrum binary data and metadata, selected ion chromatograms, and pseudo-2D gel image creation
msdiff comparison of two data files, for validation of conversion and preprocessing
mspicture command line pseudo-2D gel image creation with mapped peptide ID info
SeeMS interactive viewer for mass spec data files (Windows only)
Skyline interactive application for building Selected Reaction Monitoring (SRM) / Multiple Reaction Monitoring (MRM) methods and analyzing the resulting mass spectrometer data. (Windows only)
Topograph interactive application for working with metabolic labeling and protein metobolism experiments. (Windows only)
mscat exports data from a variety of formats into 4 column text format
txt2mzml converts data from 4 column format to mzML


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