msconvert |
general data format conversion tool
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msaccess |
command line access to mass spec data files, including spectrum binary data and metadata, selected ion chromatograms, and pseudo-2D gel image creation
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msdiff |
comparison of two data files, for validation of conversion and preprocessing |
mspicture |
command line pseudo-2D gel image creation with mapped peptide ID info |
SeeMS |
interactive viewer for mass spec data files (Windows only) |
Skyline |
interactive application for building Selected Reaction Monitoring (SRM) / Multiple Reaction Monitoring (MRM) methods and analyzing the resulting mass spectrometer data. (Windows only) |
Topograph |
interactive application for working with metabolic labeling and protein metobolism experiments. (Windows only) |
mscat |
exports data from a variety of formats into 4 column text format |
txt2mzml |
converts data from 4 column format to mzML |