BlibToMS2

Description:  Write an MS2 file that contains all spectra in a library.

Usage: BlibToMS2 [options]  <library>  <MS2>

Input:

• <library> - a library file
• <MS2> - the name of the MS2 file produced

Output:  A text file in MS2 format containing all spectra in the library. The line containing the scan number actually contains the library ID number and the spectrum scan number in the format 'S    <ID>    <scan number>'.

Options:

• -f <sequence file>, --file <sequence file> - print scan number, charge, sequence, modifications and annotation of each library spectrum to a separate file.
• -q, --sequence - Include the sequence for each library spectrum in the output file using a 'charge dependent' comment. Between the Z line and the peak list for each spectrum is a line that reads 'D seq sequence'.
• -s, --sort - sort spectra by ID number. Default is to sort by m/z.
• -v, --verbose <0|1|2|3> - Set the verbosity level of the output to stderr. The default level is 2.