Under Construction

Latest News:

October 12, 2009
Many new bugfixes have been put in place. To speed up PAnDA, and reduce the complexity of data analysis, MakeMS2 has been removed from the pipeline. RAW files are read directly by ... Read more


Latest Release: Version 2.02 alpha, October 12, 2009.

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About PAnDA

Post Analysis Data Aquisition is a framework and methodology to specifically target ions missed by data dependent acquisition. Also known as PAnDA, this framework utilizes high resolution mass spectra to detect features for fragmentation. Features are tracked in a database to determine if MS/MS spectra were obtained for them, and subsequent sample analysis targets those features that were not selected for fragmentation.

The PAnDA methodology includes software designed for Thermo Fisher Scientific hybrid mass analyzers. The software automates the process of data acquisition, data analysis, and method file modification. Detailed information can be found in:

Hoopmann MR, Merrihew GE, von Haller PD, Maccoss MJ. Post Analysis Data Acquisition for the Iterative MS/MS Sampling of Proteomics Mixtures. J Proteome Res. 2009 Mar 3. [Epub ahead of print]


1. Installation & Setup

2. Quick Start Guide


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Links & Resources

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