Please use the following citations:
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Hoopmann MR, MacCoss MJ, and Moritz RL. "Identification of peptide features in precursor spectra using Hardklör and Krönik." Curr Protoc Bioinformatics 2012: Mar;Chapter13:Unit13.18. Link
Trnka MJ, Baker PR, Robinson PJ, Burlingame AL, and Chalkley RJ. "Matching cross-linked peptide spectra: only as good as the worse indentification." Mol Cell Proteomics 2014, 13(2):420-34 Link
Jung S, Smith JJ, von Haller PD, Dilworth DJ, Sitko KA, Miller LR, Saleem RA, Goodlett DR, and Aitchison JD. "Global analysis of condition-specific subcellular protein distribution and abundance." Mol Cell Proteomics 2013, 12(5):1421-35 Link
Moruz L, Pichler P, Stranzl T, Mechtler K, and Käll L. "Optimized Nonlinear Gradients for Reversed-Phase Liquid Chromatography in Shotgun Proteomics" Anal Chem 2013, 85(16):7777-7785 Link
Guo X and Kristal BS. "The use of underloaded C(18) solid-phase extraction plates increases reproducibility of analysis of tryptic peptides from unfractionated human plasma." Anal Biochem 2012, 426(1):86-90. Link
Lun AT, Wong JW, and Downard KM. "FluShuffle and FluResort: new algorithms to identify reassorted strains of the influenza virus by mass spectrometry." BMC Bioinformatics 2012, Aug 20;13:208 Link